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A

a - Variable in class org.openmarkov.core.model.network.modelUncertainty.DomainInterval
 
AboutBox - Class in org.openmarkov.gui.dialog
Class to show an About Box window for the OpenMarkov Project
AboutBox() - Constructor for class org.openmarkov.gui.dialog.AboutBox
constructor on a open window
AboutBox(JFrame) - Constructor for class org.openmarkov.gui.dialog.AboutBox
constructor on a parent JFrame
absentData - Variable in class org.openmarkov.gui.dialog.common.PrefixedDataTablePanel
Array that contains the prefixed data that is not in the table.
absentPrefixedData() - Method in class org.openmarkov.gui.dialog.common.PrefixedDataTablePanel
This method returns an array of arrays of strings whose elements are the prefixed ones that aren't in the array 'data'.
absoluteFrequencies(CaseDatabase, List<Node>) - Method in class org.openmarkov.learning.algorithm.pc.independencetester.CrossEntropyIndependenceTester
Calculate the absolute frequencies in the database of each of the configurations of the given nodes.
absoluteRadioButton - Variable in class org.openmarkov.costEffectiveness.CEDecisionResults
GUI controls
absoluteRadioButton - Variable in class org.openmarkov.sensitivityanalysis.dialog.CEProbabilisticDialog
GUI controls
ABSORB_NODE - Static variable in class org.openmarkov.gui.menutoolbar.common.ActionCommands
Action invoked when the user wants to absorb a node into the net for arc reversal algorithm.
ABSORB_PARENTS - Static variable in class org.openmarkov.gui.menutoolbar.common.ActionCommands
Absorb parents
absorbAllIntermediateNumericNodes(ProbNet, EvidenceCase) - Static method in class org.openmarkov.core.inference.BasicOperations
 
absorbAllIntermediateNumericNodes(ProbNet, Variable, EvidenceCase, Set<Variable>) - Static method in class org.openmarkov.core.inference.BasicOperations
 
absorbAllIntermediateNumericNodes(ProbNet, EvidenceCase) - Static method in class org.openmarkov.core.inference.tasks.TaskUtilities
 
absorbedNode - Variable in class org.openmarkov.core.action.AbsorbNodeEdit
 
absorbedVariable - Variable in class org.openmarkov.core.action.AbsorbNodeEdit
 
absorbNode() - Method in class org.openmarkov.gui.window.edition.EditorPanel
This method absorbs a node into the rest of the net arc-reversal style.
absorbNode() - Method in class org.openmarkov.gui.window.edition.NetworkPanel
This method absorbs a node into the rest of the net arc-reversal style.
AbsorbNodeEdit - Class in org.openmarkov.core.action
This edit makes the net absorb a node, merging all the utility children into one and updating its potential.
AbsorbNodeEdit(ProbNet, Variable) - Constructor for class org.openmarkov.core.action.AbsorbNodeEdit
 
absorbNodeMenuItem - Variable in class org.openmarkov.gui.menutoolbar.menu.NodeContextualMenu
Object that represents the item 'AbsorbNode'.
AbsorbNodeValidator - Class in org.openmarkov.gui.constraint
This class validates if a chance or decision node can be absorbed into an utility node
AbsorbNodeValidator() - Constructor for class org.openmarkov.gui.constraint.AbsorbNodeValidator
 
absorbParents(ProbNet, Node, EvidenceCase) - Static method in class org.openmarkov.core.inference.BasicOperations
 
absorbParents() - Method in class org.openmarkov.gui.window.edition.EditorPanel
TODO: Fill as desired
absorbParents() - Method in class org.openmarkov.gui.window.edition.NetworkPanel
This method absorbs intermediate utility nodes.
AbsorbParentsEdit - Class in org.openmarkov.core.action
 
AbsorbParentsEdit(ProbNet, Node) - Constructor for class org.openmarkov.core.action.AbsorbParentsEdit
 
absorbParentsMenuItem - Variable in class org.openmarkov.gui.menutoolbar.menu.NodeContextualMenu
Object that represents the item 'AbsorbParents'.
AbsorbParentsValidator - Class in org.openmarkov.gui.constraint
This class validates the necessary requirements of a node to allow absorbing intermediate parents.
AbsorbParentsValidator() - Constructor for class org.openmarkov.gui.constraint.AbsorbParentsValidator
 
accept(File) - Method in class org.openmarkov.gui.dialog.io.FileFilterAll
Accepts all the directories (by default in OpenMarkovtFileFilter) and files whose extension is 'pgmx'.
accept(File) - Method in class org.openmarkov.gui.dialog.io.FileFilterBasic
This method accepts every directories by default.
accumulatedWeight - Variable in class org.openmarkov.inference.likelihoodWeighting.StochasticPropagation
 
AceptButton - Variable in class org.openmarkov.learning.algorithm.em.gui.EMParametersDialog
 
AceptButton - Variable in class org.openmarkov.learning.algorithm.hillclimbing.gui.HillClimbingParametersDialog
 
AceptButton - Variable in class org.openmarkov.learning.algorithm.pc.gui.PCParametersDialog
 
AceptButtonActionPerformed(ActionEvent) - Method in class org.openmarkov.learning.algorithm.em.gui.EMParametersDialog
 
AceptButtonActionPerformed(ActionEvent) - Method in class org.openmarkov.learning.algorithm.hillclimbing.gui.HillClimbingParametersDialog
 
AceptButtonActionPerformed(ActionEvent) - Method in class org.openmarkov.learning.algorithm.pc.gui.PCParametersDialog
 
ActionCommands - Class in org.openmarkov.gui.dialog.treeadd
 
ActionCommands() - Constructor for class org.openmarkov.gui.dialog.treeadd.ActionCommands
 
ActionCommands - Class in org.openmarkov.gui.menutoolbar.common
This class defines the constants used to identify the actions invoked by the user.
ActionCommands() - Constructor for class org.openmarkov.gui.menutoolbar.common.ActionCommands
 
actionPerformed(ActionEvent) - Method in class org.openmarkov.gui.component.DiscretizeTablePanel
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class org.openmarkov.gui.dialog.AboutBox
Close the dialog on a button event.
actionPerformed(ActionEvent) - Method in class org.openmarkov.gui.dialog.common.GLMPotentialPanel
 
actionPerformed(ActionEvent) - Method in class org.openmarkov.gui.dialog.common.KeyTablePanel
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class org.openmarkov.gui.dialog.common.ProbabilityTablePanel
 
actionPerformed(ActionEvent) - Method in class org.openmarkov.gui.dialog.common.TablePotentialPanel
Handles an action performed revised-->not changed
actionPerformed(ActionEvent) - Method in class org.openmarkov.gui.dialog.common.WeibullPotentialPanel
 
actionPerformed(ActionEvent) - Method in class org.openmarkov.gui.dialog.configuration.PreferencesDialog
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class org.openmarkov.gui.dialog.network.NetworkAdvancedPanel
 
actionPerformed(ActionEvent) - Method in class org.openmarkov.gui.dialog.node.AddFindingDialog
 
actionPerformed(ActionEvent) - Method in class org.openmarkov.gui.dialog.node.NodeDefinitionPanel
 
actionPerformed(ActionEvent) - Method in class org.openmarkov.gui.dialog.node.NodeDomainValuesTablePanel
 
actionPerformed(ActionEvent) - Method in class org.openmarkov.gui.dialog.node.NodeDomainValuesTablePanelListener
 
actionPerformed(ActionEvent) - Method in class org.openmarkov.gui.dialog.node.NodePropertiesDialogListenerAssistant
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class org.openmarkov.gui.dialog.node.PotentialEditDialog
 
actionPerformed(ActionEvent) - Method in class org.openmarkov.gui.dialog.PropagationOptionsDialogListener
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class org.openmarkov.gui.dialog.ShortcutsBox
Close the dialog on a button event.
actionPerformed(ActionEvent) - Method in class org.openmarkov.gui.dialog.treeadd.TreeADDEditorPanel
 
actionPerformed(ActionEvent) - Method in class org.openmarkov.gui.loader.menu.DefaultMenuItemListener
When a MenuItem is activated, this method finds and calls the MenuItem's MenuItemHandler.
actionPerformed(ActionEvent) - Method in class org.openmarkov.gui.window.dt.DecisionTreePanel.TreePanelListener
 
actionPerformed(ActionEvent) - Method in class org.openmarkov.gui.window.MainPanelListenerAssistant
This method listens to the user actions on the main menu.
actionPerformed(ActionEvent) - Method in class org.openmarkov.gui.window.mdi.MDI
This method listens to the user actions on the main menu.
actionPerformed(ActionEvent) - Method in class org.openmarkov.gui.window.message.MessageWindow
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class org.openmarkov.stochasticPropagationOutput.StochasticPropagationOutputFrame
 
actionPerformedAddValue() - Method in class org.openmarkov.gui.component.DiscretizeTablePanel
Invoked when the button 'add' is pressed.
actionPerformedAddValue() - Method in class org.openmarkov.gui.component.RevelationArcDiscretizeTablePanel
Invoked when the button 'add' is pressed.
actionPerformedAddValue() - Method in class org.openmarkov.gui.dialog.common.GLMPanel
Invoked when the button 'add' is pressed.
actionPerformedAddValue() - Method in class org.openmarkov.gui.dialog.common.KeyTablePanel
Invoked when the button 'add' is pressed.
actionPerformedAddValue() - Method in class org.openmarkov.gui.dialog.common.PrefixedDataTablePanel
Invoked when the button 'add' is pressed.
actionPerformedAddValue() - Method in class org.openmarkov.gui.dialog.common.PrefixedKeyTablePanel
Invoked when the button 'add' is pressed.
actionPerformedAddValue() - Method in class org.openmarkov.gui.dialog.common.PrefixedOtherPropertiesTablePanel
Invoked when the button 'add' is pressed.
actionPerformedAddValue() - Method in class org.openmarkov.gui.dialog.network.DecisionCriteriaTablePanel
 
actionPerformedAddValue() - Method in class org.openmarkov.gui.dialog.network.NetworkAgentsTablePanel
 
actionPerformedAgents() - Method in class org.openmarkov.gui.dialog.network.NetworkAdvancedPanel
 
actionPerformedCancel() - Method in class org.openmarkov.gui.dialog.configuration.PreferencesDialog
execute the Cancel action by doing an undo operation in the system and user preferences
actionPerformedDecisionCriteria() - Method in class org.openmarkov.gui.dialog.network.NetworkAdvancedPanel
 
actionPerformedDownValue() - Method in class org.openmarkov.gui.component.DiscretizeTablePanel
Invoked when the button 'down' is pressed.
actionPerformedDownValue() - Method in class org.openmarkov.gui.dialog.common.GLMPanel
Invoked when the button 'down' is pressed.
actionPerformedDownValue() - Method in class org.openmarkov.gui.dialog.common.KeyTablePanel
Invoked when the button 'down' is pressed.
actionPerformedDownValue() - Method in class org.openmarkov.gui.dialog.common.PrefixedDataTablePanel
Invoked when the button 'down' is pressed.
actionPerformedDownValue() - Method in class org.openmarkov.gui.dialog.common.PrefixedKeyTablePanel
Invoked when the button 'down' is pressed.
actionPerformedDownValue() - Method in class org.openmarkov.gui.dialog.common.PrefixedOtherPropertiesTablePanel
Invoked when the button 'down' is pressed.
actionPerformedDownValue() - Method in class org.openmarkov.gui.dialog.network.DecisionCriteriaTablePanel
 
actionPerformedDownValue() - Method in class org.openmarkov.gui.dialog.network.NetworkAgentsTablePanel
 
actionPerformedDownValue() - Method in class org.openmarkov.gui.dialog.node.ReorderVariablesPanel
 
actionPerformedExport() - Method in class org.openmarkov.gui.dialog.configuration.PreferencesDialog
execute the Cancel action
actionPerformedImport() - Method in class org.openmarkov.gui.dialog.configuration.PreferencesDialog
execute the Cancel action
actionPerformedNegativeInfinityValue() - Method in class org.openmarkov.gui.component.DiscretizeTablePanel
Invoked when the button 'InfiniteNegative' is pressed.
actionPerformedNodeNameChangeValue() - Method in class org.openmarkov.gui.dialog.node.NodePropertiesDialogListenerAssistant
Invoked when the button 'add' is pressed.
actionPerformedPositiveInfinityValue() - Method in class org.openmarkov.gui.component.DiscretizeTablePanel
Invoked when the button 'InfinitePositive' is pressed.
actionPerformedRemoveValue() - Method in class org.openmarkov.gui.component.DiscretizeTablePanel
Invoked when the button 'remove' is pressed.
actionPerformedRemoveValue() - Method in class org.openmarkov.gui.component.RevelationArcDiscretizeTablePanel
Invoked when the button 'remove' is pressed.
actionPerformedRemoveValue() - Method in class org.openmarkov.gui.dialog.common.GLMPanel
Invoked when the button 'remove' is pressed.
actionPerformedRemoveValue() - Method in class org.openmarkov.gui.dialog.common.KeyTablePanel
Invoked when the button 'remove' is pressed.
actionPerformedRemoveValue() - Method in class org.openmarkov.gui.dialog.common.PrefixedDataTablePanel
Invoked when the button 'remove' is pressed.
actionPerformedRemoveValue() - Method in class org.openmarkov.gui.dialog.common.PrefixedKeyTablePanel
Invoked when the button 'remove' is pressed.
actionPerformedRemoveValue() - Method in class org.openmarkov.gui.dialog.common.PrefixedOtherPropertiesTablePanel
Invoked when the button 'remove' is pressed.
actionPerformedRemoveValue() - Method in class org.openmarkov.gui.dialog.network.DecisionCriteriaTablePanel
 
actionPerformedRemoveValue() - Method in class org.openmarkov.gui.dialog.network.NetworkAgentsTablePanel
 
actionPerformedReorderVariables() - Method in class org.openmarkov.gui.dialog.node.PotentialEditDialog
 
actionPerformedReset() - Method in class org.openmarkov.gui.dialog.configuration.PreferencesDialog
execute the Reset action by cleaning preferences in the user preferences
actionPerformedSave() - Method in class org.openmarkov.gui.dialog.configuration.PreferencesDialog
execute the Save action by doing a sync in the system and user preferences
actionPerformedStandardDomain(ActionEvent) - Method in class org.openmarkov.gui.dialog.node.NodeDomainValuesTablePanel
 
actionPerformedTemporalOptions() - Method in class org.openmarkov.gui.dialog.network.NetworkAdvancedPanel
 
actionPerformedUpValue() - Method in class org.openmarkov.gui.component.DiscretizeTablePanel
Invoked when the button 'up' is pressed.
actionPerformedUpValue() - Method in class org.openmarkov.gui.dialog.common.GLMPanel
Invoked when the button 'up' is pressed.
actionPerformedUpValue() - Method in class org.openmarkov.gui.dialog.common.KeyTablePanel
Invoked when the button 'up' is pressed.
actionPerformedUpValue() - Method in class org.openmarkov.gui.dialog.common.PrefixedDataTablePanel
Invoked when the button 'up' is pressed.
actionPerformedUpValue() - Method in class org.openmarkov.gui.dialog.common.PrefixedKeyTablePanel
Invoked when the button 'up' is pressed.
actionPerformedUpValue() - Method in class org.openmarkov.gui.dialog.common.PrefixedOtherPropertiesTablePanel
Invoked when the button 'up' is pressed.
actionPerformedUpValue() - Method in class org.openmarkov.gui.dialog.network.DecisionCriteriaTablePanel
 
actionPerformedUpValue() - Method in class org.openmarkov.gui.dialog.network.NetworkAgentsTablePanel
 
actionPerformedUpValue() - Method in class org.openmarkov.gui.dialog.node.ReorderVariablesPanel
 
activateByTitle(boolean) - Method in class org.openmarkov.gui.window.MainPanelListenerAssistant
Sets the mode of painting the nodes.
activateEditionMode(String) - Method in class org.openmarkov.gui.window.MainPanelListenerAssistant
This method activates an edition option for the current network.
activeToolbars - Variable in class org.openmarkov.gui.menutoolbar.plugin.ToolbarManager
 
acummulativeColumns - Variable in class org.openmarkov.gui.component.ICIValuesTableCellRenderer
 
adaptDatabaseToModelNet(CaseDatabase, ProbNet) - Method in class org.openmarkov.learning.core.LearningManager
Adapt case database to model network's variables
AdaptiveImportanceSampling - Class in org.openmarkov.inference.adaptiveImportanceSampling
 
AdaptiveImportanceSampling(ProbNet) - Constructor for class org.openmarkov.inference.adaptiveImportanceSampling.AdaptiveImportanceSampling
 
adaptNetwork(ProbNet, List<TablePotential>, Map<ICIPotential, List<TablePotential>>) - Method in class org.openmarkov.learning.algorithm.em.EMAlgorithm
 
adaptToolBarSize() - Method in class org.openmarkov.gui.window.MainPanel
This method checks the size of the components present in the toolbar panel and adapts its size if necessary
ADD_SUBTREE - Static variable in class org.openmarkov.gui.dialog.treeadd.ActionCommands
Action invoked when the user wants to add a subtree.
ADD_VARIABLES - Static variable in class org.openmarkov.gui.dialog.treeadd.ActionCommands
Action invoked when the user wants to add variables to a potential.
addActionListener(ActionListener) - Method in class org.openmarkov.gui.dialog.common.GLMPanel
 
addBranch(TreeADDBranch) - Method in class org.openmarkov.core.model.network.potential.treeadd.TreeADDPotential
Add a new branch
addBranchAndChildToDecisionTree(ProbNet, Variable, State, DANDecisionTreeInference) - Method in class org.openmarkov.inference.decompositionIntoSymmetricDANs.core.DANDecisionTreeInference
 
addButtonToButtonsPanel(JButton) - Method in class org.openmarkov.gui.dialog.common.BottomPanelButtonDialog
This method adds a new button to the buttons panel and a space of 10 units to the right of this button.
addChild(DecisionTreeElement) - Method in class org.openmarkov.core.dt.DecisionTreeNode
 
addChild(DecisionTreeElementPanel) - Method in class org.openmarkov.gui.window.dt.DecisionTreeElementPanel
 
addChildEvaluationResultsAndUpdateDecisionTree(DANDecisionTreeInference, ProbNet, Variable, State) - Method in class org.openmarkov.inference.decompositionIntoSymmetricDANs.core.DANDecisionTreeInference
 
addClassVariable(Variable, double[], int, int) - Method in class org.openmarkov.evaluation.result.EvaluationSample
 
addCluster(ClusterOfVariables) - Method in class org.openmarkov.inference.huginPropagation.ClusterForest
 
addCommentListener(CommentListener) - Method in class org.openmarkov.gui.dialog.common.CommentHTMLScrollPane
 
addComponentKeyListener(KeyListener) - Method in class org.openmarkov.gui.menutoolbar.toolbar.ZoomComboBox
Adds a new key listener to the component where edition is performed.
addConstraint(PNConstraint, boolean) - Method in class org.openmarkov.core.model.network.ProbNet
 
addConstraint(PNConstraint) - Method in class org.openmarkov.core.model.network.ProbNet
 
addConstraints(List<PNConstraint>, boolean) - Method in class org.openmarkov.core.model.network.ProbNet
 
addEdit(UndoableEdit) - Method in class org.openmarkov.core.action.UndoManagerSupport
Adds an UndoableEdit to this UndoManager, if it's possible.
addEditionButton(AbstractButton) - Method in class org.openmarkov.gui.menutoolbar.toolbar.EditionToolBar
 
addEditorPanelSizeListener(EditorPanelSizeListener) - Method in class org.openmarkov.gui.window.edition.EditorPanel
This method allows to an object to be registered as size listener.
addEditSelectionListener(EditProposalTable.EditSelectionListener) - Method in class org.openmarkov.learning.gui.interactive.EditProposalTable
 
addElviraProperties(ProbNet) - Method in class org.openmarkov.learning.core.LearningManager
Adds elvira properties to the learned net.
addEvidencePotential(TablePotential) - Method in class org.openmarkov.inference.huginPropagation.ClusterOfVariables
 
addEvidencePotentials(HashMap<Variable, TablePotential>, List<Variable>, EvidenceCase) - Static method in class org.openmarkov.core.model.network.potential.EvidencePotentials
For each variableOfInterest contained in evidence, this method generates an evidence potential.
addEvidenceVariable(Variable, int) - Method in class org.openmarkov.evaluation.result.EvaluationSample
Add an evidence variable to the sample
addExtension(String) - Method in class org.openmarkov.gui.dialog.io.FileFilterBasic
Returns a string containing the name of the file adding to it the extension.
addFinding(Finding) - Method in class org.openmarkov.core.model.network.EvidenceCase
 
addFinding(ProbNet, String, String) - Method in class org.openmarkov.core.model.network.EvidenceCase
 
addFinding(ProbNet, String, double) - Method in class org.openmarkov.core.model.network.EvidenceCase
 
addFinding() - Method in class org.openmarkov.gui.graphic.VisualState
 
addFinding() - Method in class org.openmarkov.gui.window.edition.EditorPanel
This method adds a finding in a node.
addFinding() - Method in class org.openmarkov.gui.window.edition.NetworkPanel
This method adds a finding in a node.
AddFindingDialog - Class in org.openmarkov.gui.dialog.node
Dialog box to add a finding in a node.
AddFindingDialog(Window, VisualNode, Finding, Graphics2D, EditorPanel) - Constructor for class org.openmarkov.gui.dialog.node.AddFindingDialog
This method initialises this instance.
addFindingMenuItem - Variable in class org.openmarkov.gui.menutoolbar.menu.NodeContextualMenu
Object that represents the item 'addFinding'.
addFindings(Collection<Finding>) - Method in class org.openmarkov.core.model.network.EvidenceCase
 
addFrameStateListener(MDIListener) - Method in class org.openmarkov.gui.window.mdi.MDI
This method allows to an object to be registered as frame state listener.
addFrameTitleListener(FrameTitleListener) - Method in class org.openmarkov.gui.window.mdi.InternalFrame
This method allows to an object to be registered as a listener.
addIfNonExisting(Hashtable<UncertainValue, SystematicSampling.SubPotentialAndPosition>, UncertainValue, SystematicSampling.SubPotentialAndPosition) - Static method in class org.openmarkov.core.model.network.modelUncertainty.SystematicSampling
 
addImplicitLink(T, T, boolean) - Method in class org.openmarkov.core.model.graph.Graph
Adds an implicit link by setting cross references between the two nodes.
addInstance(Instance) - Method in class org.openmarkov.core.oopn.OOPNet
 
AddInstanceEdit - Class in org.openmarkov.core.oopn.action
 
AddInstanceEdit(OOPNet, ProbNet, String, Point2D.Double) - Constructor for class org.openmarkov.core.oopn.action.AddInstanceEdit
 
additionalProperties - Variable in class org.openmarkov.core.model.network.Node
This object contains all the information that the parser reads from disk that does not have a direct connection with the attributes stored in the Node object.
additionalProperties - Variable in class org.openmarkov.core.model.network.ProbNet
This object contains all the information that the parser reads from disk that does not have a direct connection with the attributes stored in the ProbNet object.
additionalProperties - Variable in class org.openmarkov.core.model.network.State
 
additionalProperties - Variable in class org.openmarkov.core.model.network.Variable
 
addLink(Link<T>) - Method in class org.openmarkov.core.model.graph.Graph
 
addLink(T, T, boolean) - Method in class org.openmarkov.core.model.graph.Graph
Inserts a link between node1 and node2.
addLink(Variable, Variable, boolean) - Method in class org.openmarkov.core.model.network.ProbNet
Inserts a link (directed = true or false) between the nodes associated to variable1 and variable2 in this graph.
AddLinkEdit - Class in org.openmarkov.core.action
Creates a directed or undirected link between two nodes associated to two variables in a ProbNet
AddLinkEdit(ProbNet, Variable, Variable, boolean, boolean) - Constructor for class org.openmarkov.core.action.AddLinkEdit
 
AddLinkEdit(ProbNet, Variable, Variable, boolean) - Constructor for class org.openmarkov.core.action.AddLinkEdit
 
addLinkModelNet - Static variable in class org.openmarkov.learning.gui.LearningDialog
 
addLocaleChangeListener(LocaleChangeListener) - Method in class org.openmarkov.gui.localize.StringDatabase
 
addMarginalize(ArrayList<CEP>, Variable, double[]) - Static method in class org.openmarkov.inference.variableElimination.operation.CEPotentialOperation
 
addMenu(MenuToolBarBasic) - Method in class org.openmarkov.gui.menutoolbar.common.MenuAssistant
 
addNewEvidenceCase(EvidenceCase) - Method in class org.openmarkov.gui.window.edition.EditorPanel
This method adds a new evidence case
addNode(T) - Method in class org.openmarkov.core.model.graph.Graph
 
addNode(Node) - Method in class org.openmarkov.core.model.network.NodeTypeDepot
 
addNode(Variable, NodeType) - Method in class org.openmarkov.core.model.network.ProbNet
 
addNode(Node) - Method in class org.openmarkov.core.model.network.ProbNet
 
addNode(HashMap<String, Object>, State[], NodeType, String) - Method in class org.openmarkov.io.database.elvira.ElviraDBParser
Adds a Node to the ProbNet.
addNode(HashMap<String, String>, State[], NodeType, String) - Method in class org.openmarkov.io.database.weka.ArffParser
Adds a Node to the ProbNet.
AddNodeEdit - Class in org.openmarkov.core.action
AddNodeEdit is a edit that allow add a node to ProbNet object.
AddNodeEdit(ProbNet, Variable, NodeType, Point2D.Double) - Constructor for class org.openmarkov.core.action.AddNodeEdit
Creates a new AddNodeEdit with the network where the new new node will be added and basic information about it.
AddNodeEdit(ProbNet, Variable, NodeType) - Constructor for class org.openmarkov.core.action.AddNodeEdit
Creates a new AddNodeEdit with the network where the new new node will be added and basic information about it.
addNoForgettingArcs(ProbNet) - Static method in class org.openmarkov.core.model.network.ProbNetOperations
Method to add non-forgetting arcs.
addNonSVUtilityNodesToDecisionTree() - Method in class org.openmarkov.inference.decompositionIntoSymmetricDANs.core.DANDecisionTreeInference
Adds a utility tree at the tip of each leaf
addNotify() - Method in class org.openmarkov.gui.window.MainPanel
When this panel is added to a container, it tries to set the menubar of its top level ancestor that must be an instance of the classes JFrame or JApplet.
addOptionText(String, String) - Method in class org.openmarkov.gui.menutoolbar.common.MenuAssistant
Adds a text to the label of an option identified by an action command on the menus and toolbars.
addOptionText(String, String) - Method in interface org.openmarkov.gui.menutoolbar.common.MenuToolBarBasic
Adds a text to the label of an option identified by an action command.
addOptionText(JComponent, String, String) - Static method in class org.openmarkov.gui.menutoolbar.common.MenuToolBarBasicImpl
Adds a text to the default label of a component.
addOptionText(String, String) - Method in class org.openmarkov.gui.menutoolbar.menu.ContextualMenu
Adds a text to the label of an option identified by an action command.
addOptionText(String, String) - Method in class org.openmarkov.gui.menutoolbar.menu.ContextualMenuFactory
Adds a text to the label of an option identified by an action command.
addOptionText(String, String) - Method in class org.openmarkov.gui.menutoolbar.menu.MainMenu
Adds a text to the label of an option identified by an action command.
addOptionText(String, String) - Method in class org.openmarkov.gui.menutoolbar.toolbar.ToolBarBasic
Adds a text to the label of an option identified by an action command.
addOrphanClique(HuginClique) - Method in class org.openmarkov.inference.huginPropagation.HuginForest
 
addPanelMenuItem(JPanel, String) - Method in class org.openmarkov.gui.window.mdi.MDIMenu
Adds a new menu item to the panel list that appears below the others menu options.
addParent(TreeADDBranch) - Method in class org.openmarkov.core.model.network.potential.sdag.SDAGStrategyTree
 
addParent(Variable) - Method in class org.openmarkov.gui.dialog.common.ProbabilityTablePanel
 
addPlugin(Class<?>) - Method in class org.openmarkov.plugin.PluginManager
Adds a new plugin to the manager.
addPlugin(Class<?>) - Method in interface org.openmarkov.plugin.service.PluginManagerIF
Adds a new plugin to the manager.
addPoliciesFromResolution(ProbNet) - Static method in class org.openmarkov.core.inference.tasks.TaskUtilities
 
addPotential(Potential) - Method in class org.openmarkov.core.model.network.Node
 
addPotential(Potential) - Method in class org.openmarkov.core.model.network.ProbNet
Adds the received potential to the list of potentials of the conditioned variable (the first one).
addPotential(Potential, ProbNet) - Method in class org.openmarkov.core.model.network.ProbNet
 
AddPotentialEdit - Class in org.openmarkov.core.action
 
AddPotentialEdit(ProbNet, Potential) - Constructor for class org.openmarkov.core.action.AddPotentialEdit
 
addPotentials(ArrayList<Potential>) - Method in class org.openmarkov.core.action.RemoveSeveralPotentialsEdit
Adds more potentials to delete
addPriorPotential(TablePotential) - Method in class org.openmarkov.inference.huginPropagation.ClusterOfVariables
 
addProbabilityChildEvaluation(TablePotential) - Method in class org.openmarkov.inference.decompositionIntoSymmetricDANs.core.DANInference
 
addPropagateNowButton() - Method in class org.openmarkov.gui.menutoolbar.toolbar.InferenceToolBar
This method adds the button 'Propagate Now' on this tool bar.
addPropagateNowItem() - Method in class org.openmarkov.gui.menutoolbar.menu.MainMenu
This method adds the item 'Propagate Now' on the inference menu.
addReferenceLink(ReferenceLink) - Method in class org.openmarkov.core.oopn.OOPNet
Add an instance link
AddReferenceLinkEdit - Class in org.openmarkov.core.oopn.action
 
AddReferenceLinkEdit(ProbNet, Instance, Instance, Instance) - Constructor for class org.openmarkov.core.oopn.action.AddReferenceLinkEdit
 
AddReferenceLinkEdit(ProbNet, Node, Node) - Constructor for class org.openmarkov.core.oopn.action.AddReferenceLinkEdit
 
addResultsOfChildEvaluation(DANInference) - Method in class org.openmarkov.inference.decompositionIntoSymmetricDANs.core.DANInference
 
addRevealingInterval(PartitionedInterval) - Method in class org.openmarkov.core.model.graph.Link
Adds the interval to the revealing condition list.
addRevealingState(State) - Method in class org.openmarkov.core.model.graph.Link
Adds the state to the revealing condition list.
addRow(JPanel, String, String) - Method in class org.openmarkov.gui.dialog.ShortcutsBox
 
addSample(EvaluationSample) - Method in class org.openmarkov.evaluation.result.EvaluationResult
Adds a sample to the evaluation result sample list
addSelectionListener(SelectionListener) - Method in class org.openmarkov.gui.graphic.VisualNetwork
Sets a new selection listener.
addSelectionListener(SelectionListener) - Method in class org.openmarkov.gui.window.edition.EditorPanel
Sets a new selection listener.
addSelectionListener(SelectionListener) - Method in class org.openmarkov.gui.window.edition.NetworkPanel
Sets a new selection listener.
addShiftedNode(Node, int, double, double) - Method in class org.openmarkov.core.model.network.ProbNet
Condition: oldNode belongs to this probNet
addState(String) - Method in class org.openmarkov.gui.dialog.common.ProbabilityTablePanel
 
AddStatesCheckBoxPanel - Class in org.openmarkov.gui.dialog.treeadd
 
AddStatesCheckBoxPanel(TreeADDBranch, TreeADDPotential) - Constructor for class org.openmarkov.gui.dialog.treeadd.AddStatesCheckBoxPanel
 
AddStatesToBranchDialog - Class in org.openmarkov.gui.dialog.treeadd
 
AddStatesToBranchDialog(Window, TreeADDBranch, TreeADDPotential) - Constructor for class org.openmarkov.gui.dialog.treeadd.AddStatesToBranchDialog
 
addSubPotentials() - Method in class org.openmarkov.io.elvira.ElviraParser
Adds the sub-potentials stored in subPotentials to ICIPotentials.
addSubtree - Variable in class org.openmarkov.gui.dialog.treeadd.TreeADDEditorPanel
 
addSubtree(ActionEvent, TreeADDBranch, TreePath) - Method in class org.openmarkov.gui.dialog.treeadd.TreeADDEditorPanel
 
addToolbar(String) - Method in class org.openmarkov.gui.menutoolbar.plugin.ToolbarManager
 
addToSelection(Point2D.Double, Graphics2D) - Method in class org.openmarkov.gui.graphic.VisualNetwork
Adds whatever is in that position to the selection
addToSelection(Point2D.Double, Graphics2D) - Method in class org.openmarkov.gui.oopn.VisualOONetwork
 
addTreeModelListener(TreeModelListener) - Method in class org.openmarkov.gui.dialog.treeadd.TreeADDModel
 
addTreeModelListener(TreeModelListener) - Method in class org.openmarkov.gui.window.dt.DecisionTreeModel
 
addValue(int) - Method in class org.openmarkov.core.inference.Choice
Used in case of draw.
addValueButton - Variable in class org.openmarkov.gui.dialog.common.KeyTablePanel
Button to add a new value.
addVariable(Variable) - Method in class org.openmarkov.core.model.network.potential.canonical.MaxPotential
 
addVariable(Variable) - Method in class org.openmarkov.core.model.network.potential.canonical.MinPotential
 
addVariable(Variable) - Method in class org.openmarkov.core.model.network.potential.canonical.TuningPotential
 
addVariable(Variable) - Method in class org.openmarkov.core.model.network.potential.FunctionPotential
Adds the variable to the new potential.
addVariable(Variable) - Method in class org.openmarkov.core.model.network.potential.LinearCombinationPotential
 
addVariable(Variable) - Method in class org.openmarkov.core.model.network.potential.Potential
Adds variable to a potential implemented in each child class
addVariable(Variable) - Method in class org.openmarkov.core.model.network.potential.SumPotential
 
addVariable(Variable) - Method in class org.openmarkov.core.model.network.potential.TablePotential
 
addVariable(Variable) - Method in class org.openmarkov.core.model.network.potential.treeadd.TreeADDPotential
Adds variable to a treeADD potential
addVariableReplicatingValuesAndUncertainValues(TablePotential, Variable) - Static method in class org.openmarkov.core.model.network.modelUncertainty.SystematicSampling
 
addVariables - Variable in class org.openmarkov.gui.dialog.treeadd.TreeADDEditorPanel
 
AddVariablesCheckBoxPanel - Class in org.openmarkov.gui.dialog.treeadd
 
AddVariablesCheckBoxPanel(TreeADDBranch, TreeADDPotential) - Constructor for class org.openmarkov.gui.dialog.treeadd.AddVariablesCheckBoxPanel
 
AddVariablesDialog - Class in org.openmarkov.gui.dialog.treeadd
 
AddVariablesDialog(Window, TreeADDBranch, TreeADDPotential) - Constructor for class org.openmarkov.gui.dialog.treeadd.AddVariablesDialog
 
addVariablesToPotential(ActionEvent, TreeADDBranch, TreePath) - Method in class org.openmarkov.gui.dialog.treeadd.TreeADDEditorPanel
 
adjustColumnSize() - Method in class org.openmarkov.gui.dialog.common.SelectableKeyTablePanel
Adjusts the column width.
adjustPanelDimension() - Method in class org.openmarkov.gui.window.edition.EditorPanel
If the dimensions of the network are greater than the dimensions of the panel, changes the dimensions of the panel in order to accommodate the whole network.
adjustText(String, double, int, Font, Graphics2D) - Method in class org.openmarkov.gui.graphic.VisualElement
Adjusts the text that should be shown in a limited space.
AdvancedPropertiesTableModel - Class in org.openmarkov.gui.dialog.network
 
AdvancedPropertiesTableModel(Object[][], String[]) - Constructor for class org.openmarkov.gui.dialog.network.AdvancedPropertiesTableModel
constructor for the model
advancedPropertiestableModel - Variable in class org.openmarkov.gui.dialog.network.AdvancedPropertiesTablePanel
 
AdvancedPropertiesTablePanel - Class in org.openmarkov.gui.dialog.network
 
AdvancedPropertiesTablePanel(String[], ProbNet) - Constructor for class org.openmarkov.gui.dialog.network.AdvancedPropertiesTablePanel
 
AdvancedPropertiesTablePanel(String[], Object[][], String) - Constructor for class org.openmarkov.gui.dialog.network.AdvancedPropertiesTablePanel
 
advertisement - Variable in class org.openmarkov.gui.dialog.AboutBox
 
agent - Variable in class org.openmarkov.core.model.network.Variable
Agent for decision nodes
agentIndex - Variable in class org.openmarkov.gui.action.NetworkAgentEdit
 
agentName - Variable in class org.openmarkov.gui.action.NetworkAgentEdit
 
agents - Variable in class org.openmarkov.core.model.network.ProbNet
Set of agents, defined by a name.
agentsButton - Variable in class org.openmarkov.gui.dialog.network.NetworkAdvancedPanel
 
AICMetric - Class in org.openmarkov.learning.metric.aic
This class implements the AIC metric.
AICMetric() - Constructor for class org.openmarkov.learning.metric.aic.AICMetric
 
algorithm - Variable in class org.openmarkov.stochasticPropagationOutput.XlsxWrite
 
algorithmComboBox - Variable in class org.openmarkov.learning.gui.LearningDialog
 
algorithmComboBoxActionPerformed(ActionEvent) - Method in class org.openmarkov.learning.gui.LearningDialog
 
AlgorithmConfiguration - Annotation Type in org.openmarkov.learning.gui
 
AlgorithmConfigurationManager - Class in org.openmarkov.learning.gui
 
AlgorithmConfigurationManager(JFrame) - Constructor for class org.openmarkov.learning.gui.AlgorithmConfigurationManager
Constructor for AlgorithmConfigurationManager.
algorithmConfigurationManager - Variable in class org.openmarkov.learning.gui.LearningDialog
 
algorithmConfigurations - Variable in class org.openmarkov.learning.gui.AlgorithmConfigurationManager
 
algorithmExecutionTime - Variable in class org.openmarkov.inference.likelihoodWeighting.StochasticPropagation
 
AlgorithmLabel - Variable in class org.openmarkov.learning.gui.LearningDialog
 
algorithmName - Variable in class org.openmarkov.stochasticPropagationOutput.StochasticPropagationOutputFrame
 
AlgorithmParametersDialog - Class in org.openmarkov.learning.gui
This abstract class represents the dialog that shows the user the options and parameters of each learning algorithm.
AlgorithmParametersDialog(Frame, boolean) - Constructor for class org.openmarkov.learning.gui.AlgorithmParametersDialog
Dialog that shows the user the options and parameters of each learning algorithm.
AlgorithmPerformanceMonitoring - Interface in org.openmarkov.core.inference
 
algorithms - Variable in class org.openmarkov.stochasticPropagationOutput.StochasticPropagationOutputFrame
 
AllChanceVariablesHaveChancePotentials - Class in org.openmarkov.core.model.network.constraint
 
AllChanceVariablesHaveChancePotentials() - Constructor for class org.openmarkov.core.model.network.constraint.AllChanceVariablesHaveChancePotentials
 
allComponentsUpdateSetText(Container) - Method in class org.openmarkov.gui.localize.StringDatabase
Method to change behaviours in a container using Java Reflection API.
allowedLink(Variable, Variable) - Method in class org.openmarkov.core.model.network.constraint.NoBackwardLink
 
allowLinkAddition - Variable in class org.openmarkov.learning.core.util.ModelNetUse
 
allowLinkInversion - Variable in class org.openmarkov.learning.core.util.ModelNetUse
 
allowLinkRemoval - Variable in class org.openmarkov.learning.core.util.ModelNetUse
 
allPotentials - Variable in class org.openmarkov.core.action.CompoundRemoveNodeEdit
 
allPotentials - Variable in class org.openmarkov.core.action.CRemoveNodeEdit
 
allVariablesAreDiscrete(List<Variable>) - Method in class org.openmarkov.core.model.network.potential.UniformPotential
 
allVariablesRadioButton - Static variable in class org.openmarkov.learning.gui.LearningDialog
 
allVariablesRadioButtonActionPerformed(ActionEvent) - Method in class org.openmarkov.learning.gui.LearningDialog
 
allZeroPartition(List<CEP>) - Static method in class org.openmarkov.inference.variableElimination.operation.CEPotentialOperation
 
almostEqual(double, double) - Static method in class org.openmarkov.core.model.network.potential.operation.DiscretePotentialOperations
Compares two numbers
alpha - Variable in class org.openmarkov.core.model.network.modelUncertainty.BetaAlphaNFunction
 
alpha - Variable in class org.openmarkov.core.model.network.modelUncertainty.BetaFunction
 
alpha - Variable in class org.openmarkov.core.model.network.modelUncertainty.DirichletFunction
 
alpha - Variable in class org.openmarkov.learning.core.algorithm.LearningAlgorithm
Parameter for the parametric learning.
alpha - Variable in class org.openmarkov.learning.metric.bayesian.BayesianMetric
Parameter alpha
alphaParameter - Variable in class org.openmarkov.learning.algorithm.em.gui.EMParametersDialog
 
alphaParameter - Variable in class org.openmarkov.learning.algorithm.hillclimbing.gui.HillClimbingParametersDialog
 
alphaParameter - Static variable in class org.openmarkov.learning.algorithm.pc.gui.PCParametersDialog
 
alphaText - Variable in class org.openmarkov.learning.algorithm.em.gui.EMParametersDialog
 
alphaText - Variable in class org.openmarkov.learning.algorithm.hillclimbing.gui.HillClimbingParametersDialog
 
alphaText - Variable in class org.openmarkov.learning.algorithm.pc.gui.PCParametersDialog
 
ALREADY_DONE - Static variable in class org.openmarkov.learning.algorithm.pc.PCAlgorithm
 
alreadyConsidered(BaseLinkEdit, Set<PNEdit>) - Method in class org.openmarkov.learning.algorithm.pc.PCAlgorithm
 
alreadyConsidered(OrientLinkEdit, OrientLinkEdit) - Method in class org.openmarkov.learning.algorithm.pc.PCAlgorithm
 
ALWAYS_OBSERVED_COLOR - Static variable in class org.openmarkov.gui.graphic.VisualChanceNode
Color of the border when the node is alwaysObserved.
ALWAYS_OBSERVED_VARIABLE - Static variable in interface org.openmarkov.gui.configuration.OpenMarkovPreferencesKeys
 
alwaysObserved - Variable in class org.openmarkov.core.model.network.Node
 
alwaysObservedPropertyHasChanged() - Method in class org.openmarkov.gui.dialog.node.NodeDefinitionPanel
Starts the edit event to change the alwaysObserved property
AlwaysObservedPropertyValidator - Class in org.openmarkov.gui.constraint
 
AlwaysObservedPropertyValidator() - Constructor for class org.openmarkov.gui.constraint.AlwaysObservedPropertyValidator
 
anAboutBox - Variable in class org.openmarkov.gui.dialog.AboutBox
AboutBox visual components
analysisPanel - Variable in class org.openmarkov.costEffectiveness.CEDecisionResults
 
AnalysisTab() - Constructor for enum org.openmarkov.costEffectiveness.CEDecisionResults.AnalysisTab
 
AnalysisTab() - Constructor for enum org.openmarkov.sensitivityanalysis.dialog.CEProbabilisticDialog.AnalysisTab
 
analysisTablePanel - Variable in class org.openmarkov.costEffectiveness.CEDecisionResults
 
analysisThresholdsRadioButtons - Variable in class org.openmarkov.costEffectiveness.CEDecisionResults
 
AnalysisType - Enum in org.openmarkov.sensitivityanalysis.model
Enum with the analysis types
AnalysisType(String) - Constructor for enum org.openmarkov.sensitivityanalysis.model.AnalysisType
 
analysisType - Variable in class org.openmarkov.sensitivityanalysis.model.SensitivityAnalysisModel
Type of analysis
analysisTypeSelector - Variable in class org.openmarkov.sensitivityanalysis.dialog.SensitivityAnalysisDialog
Analysis type selector
and() - Method in class org.openmarkov.plugin.Filter
Combines a set of constrains as and logic.
announceEdit(PNEdit) - Method in class org.openmarkov.core.action.PNESupport
First part: Announce to the listeners than an edition can happen
aParentFrame - Variable in class org.openmarkov.gui.loader.menu.MenuItemAdapter
the parent Frame where this menu item is located
appendNumberToStrBuffer(StringBuilder, double) - Method in class org.openmarkov.core.model.network.CEP
 
APPLY_BUTTON - Static variable in class org.openmarkov.gui.dialog.common.OkCancelApplyUndoRedoHorizontalDialog
Constant that indicates that the user has pressed 'Apply' button.
applyCEUtilityScaling(ProbNet) - Static method in class org.openmarkov.core.model.network.UtilityOperations
Transform the probNet scaling the utility potentials with the cost-effectiveness scale
applyCompositeSimpsonsOneThirdRule(double[], int) - Static method in class org.openmarkov.core.model.network.UtilityOperations
Half-cycle correction: Composite Simpson’s 1/3rd Rule defined in Elbasha 2016 This correction requires that the total number of subintervals or time horizon to be even.
applyCompositeSimpsonsThreeEighthsRule(double[], int) - Static method in class org.openmarkov.core.model.network.UtilityOperations
Half-cycle correction: Composite Simpson’s 3/8th Rule defined in Elbasha 2016 This correction requires that the total number of subintervals is multiple of three.
applyDiscounts(ProbNet, boolean) - Static method in class org.openmarkov.core.inference.tasks.TaskUtilities
 
applyDiscountToUtilityNodes(ProbNet) - Static method in class org.openmarkov.core.model.network.TemporalNetOperations
Apply the discounts for all temporal utility nodes in the expanded network
applyEdit(PNEdit) - Method in class org.openmarkov.learning.core.LearningManager
Applies the edit passed to the learnedNet and updates parameters
applyLeftRiemannSum(double[], int) - Static method in class org.openmarkov.core.model.network.UtilityOperations
Left Riemann sum defined in Elbasha 2016
applyModelNet(Class<? extends LearningAlgorithm>, CaseDatabase, ProbNet, ModelNetUse) - Method in class org.openmarkov.learning.core.LearningManager
Adds links and constraints depending on the structure of the model net and the option selected by the user.
applyRightRiemannSum(double[], int) - Static method in class org.openmarkov.core.model.network.UtilityOperations
Right Riemann sum defined in Elbasha 2016
applySelected() - Method in class org.openmarkov.learning.gui.interactive.InteractiveLearningDialog
 
applyTransitionTime(ProbNet, boolean) - Static method in class org.openmarkov.core.inference.tasks.TaskUtilities
 
applyTransitionTime(ProbNet) - Static method in class org.openmarkov.core.model.network.TemporalNetOperations
Applies the changes necessary to indicate the time at which the transition of states in temporary networks is performed.
applyTrapezoidalRule(double[], int) - Static method in class org.openmarkov.core.model.network.UtilityOperations
Half-cycle correction: Trapezoidal rule defined in Elbasha 2016 (is the same than the life-table method)
approveSelection() - Method in class org.openmarkov.gui.dialog.io.NetworkFileChooser
 
approximateInferenceWarningGiven - Variable in class org.openmarkov.gui.window.edition.EditorPanel
 
ARC_HEIGHT - Static variable in class org.openmarkov.gui.graphic.VisualChanceNode
Height of a the arc of the rounded rectangle.
ARC_HEIGHT - Static variable in class org.openmarkov.gui.oopn.VisualInstance
Height of a the arc of the rounded rectangle.
ARC_WIDTH - Static variable in class org.openmarkov.gui.graphic.VisualChanceNode
Width of a the arc of the rounded rectangle.
ARC_WIDTH - Static variable in class org.openmarkov.gui.oopn.VisualInstance
Width of a the arc of the rounded rectangle.
areAllItsParentsAbsorbable(Node) - Static method in class org.openmarkov.core.inference.BasicOperations
 
areAllVariablesOfType(List<Node>, VariableType) - Static method in class org.openmarkov.core.inference.BasicOperations
 
areAllZero(double[]) - Method in class org.openmarkov.gui.dialog.node.UncertainValuesDialog
 
areCompatible(State, State) - Method in class org.openmarkov.core.model.graph.Link
Returns the compatibility value of the combination of state1 and state2.
areNullOptimalInterventions(List<StrategyTree>) - Static method in class org.openmarkov.core.model.network.potential.StrategyTree
 
areThereFindingsInCase() - Method in class org.openmarkov.gui.window.edition.EditorPanel
This method returns true if there are any finding in the current evidence case.
areThereFindingsInCase() - Method in class org.openmarkov.gui.window.edition.NetworkPanel
This method returns true if there are any finding in the current evidence case.
areThereInterventions(List<TablePotential>) - Static method in class org.openmarkov.core.model.network.potential.operation.DiscretePotentialOperations
 
ArffDataBaseIO - Class in org.openmarkov.io.database.weka
This class contains some routines to load a database from a '.arff' file (the format used by Weka).
ArffDataBaseIO() - Constructor for class org.openmarkov.io.database.weka.ArffDataBaseIO
 
ArffLexer - Class in org.openmarkov.io.database.weka
 
ArffLexer(InputStream) - Constructor for class org.openmarkov.io.database.weka.ArffLexer
 
ArffLexer(Reader) - Constructor for class org.openmarkov.io.database.weka.ArffLexer
 
ArffLexer(InputBuffer) - Constructor for class org.openmarkov.io.database.weka.ArffLexer
 
ArffLexer(LexerSharedInputState) - Constructor for class org.openmarkov.io.database.weka.ArffLexer
 
ArffLexerTokenTypes - Interface in org.openmarkov.io.database.weka
 
ArffParser - Class in org.openmarkov.io.database.weka
 
ArffParser(TokenBuffer, int) - Constructor for class org.openmarkov.io.database.weka.ArffParser
 
ArffParser(TokenBuffer) - Constructor for class org.openmarkov.io.database.weka.ArffParser
 
ArffParser(TokenStream, int) - Constructor for class org.openmarkov.io.database.weka.ArffParser
 
ArffParser(TokenStream) - Constructor for class org.openmarkov.io.database.weka.ArffParser
 
ArffParser(ParserSharedInputState) - Constructor for class org.openmarkov.io.database.weka.ArffParser
 
argMinICER(double, double, double[], double[], boolean[]) - Static method in class org.openmarkov.inference.variableElimination.operation.CEBaseOperations
 
argumentCondition(boolean, String) - Static method in class org.openmarkov.core.model.network.potential.operation.Util
 
ArithmeticExpressionDialog - Class in org.openmarkov.gui.dialog.common
 
ArithmeticExpressionDialog(Window, List<Variable>, String) - Constructor for class org.openmarkov.gui.dialog.common.ArithmeticExpressionDialog
 
ArithmeticExpressionDialog(Window, List<Variable>) - Constructor for class org.openmarkov.gui.dialog.common.ArithmeticExpressionDialog
 
arity - Variable in class org.openmarkov.core.oopn.action.ChangeParameterArityEdit
 
arity - Variable in class org.openmarkov.core.oopn.Instance
 
ARITY_MENUITEM - Static variable in class org.openmarkov.gui.menutoolbar.common.MenuItemNames
String database token for the item 'Arity'.
arityGroup - Variable in class org.openmarkov.gui.oopn.InstanceContextualMenu
Object used to make autoexclusive the menu item to select the arity.
arityMenuItem - Variable in class org.openmarkov.gui.oopn.InstanceContextualMenu
Object that represents the item 'Arity'
arrayXYSeries - Variable in class org.openmarkov.gui.dialog.inference.temporalevolution.TraceTemporalEvolutionDialog
 
ARROW_BACKGROUND_COLOR - Static variable in interface org.openmarkov.gui.configuration.OpenMarkovPreferencesKeys
 
ARROW_FOREGROUND_COLOR - Static variable in interface org.openmarkov.gui.configuration.OpenMarkovPreferencesKeys
 
ASCENDING - Static variable in class org.openmarkov.learning.gui.interactive.EditProposalTable
 
ASSIGNMENT - Static variable in interface org.openmarkov.io.database.elvira.ElviraDBLexerTokenTypes
 
assignMenuItem - Variable in class org.openmarkov.gui.menutoolbar.menu.UncertaintyContextualMenu
Object that represents the item 'Cut'.
assignProbUniformlyInTies(TablePotential, int, List<Integer>, int[]) - Static method in class org.openmarkov.core.model.network.potential.operation.DiscretePotentialOperations
 
assignUtilityTable(Variable, TablePotential) - Method in class org.openmarkov.core.inference.StrategyUtilities
 
associateStates - Variable in class org.openmarkov.gui.dialog.treeadd.TreeADDEditorPanel
 
associateStates(ActionEvent, TreeADDBranch, TreePath) - Method in class org.openmarkov.gui.dialog.treeadd.TreeADDEditorPanel
 
atemporalUtility - Variable in class org.openmarkov.inference.temporalevaluation.tasks.TemporalEvaluation
 
atLeastOneTrue(boolean[]) - Static method in class org.openmarkov.inference.variableElimination.operation.CEBaseOperations
 
ATTRIBUTE - Static variable in interface org.openmarkov.io.database.weka.ArffLexerTokenTypes
 
attribute() - Method in class org.openmarkov.io.database.weka.ArffParser
 
attributes - Variable in exception org.openmarkov.core.exception.OpenMarkovException
List of attributes that should pass to the GUI in order to display extra information (f.e. a network name, a number,...).
attributes() - Method in class org.openmarkov.io.database.weka.ArffParser
 
attributeSet - Variable in class org.openmarkov.gui.window.message.NonEditableTextArea
Font attributes.
AugmentedPotentialValueEdit - Class in org.openmarkov.gui.action
 
AugmentedPotentialValueEdit(Node, String, int, int, List<Integer>, Object[][]) - Constructor for class org.openmarkov.gui.action.AugmentedPotentialValueEdit
Creates a new NodePotentialEdit specifying the node to be edited, the new value of the potential, the row and column where is the value to be modified and a priority list for potentials updating.
AugmentedPotentialValueEdit(Node, String) - Constructor for class org.openmarkov.gui.action.AugmentedPotentialValueEdit
Creates a new UnivariateDistrPotentialEdit specifying the node to be and the new probability distribution.
augmentedPotentialValueEditHappened(AugmentedPotentialValueEdit) - Method in class org.openmarkov.gui.component.AugmentedValuesTable
 
AugmentedTable - Class in org.openmarkov.core.model.network.potential
 
AugmentedTable(List<Variable>, PotentialRole) - Constructor for class org.openmarkov.core.model.network.potential.AugmentedTable
 
AugmentedTable(List<Variable>, PotentialRole, String[]) - Constructor for class org.openmarkov.core.model.network.potential.AugmentedTable
 
AugmentedTable(List<Variable>, PotentialRole, String[], int, int[], int[]) - Constructor for class org.openmarkov.core.model.network.potential.AugmentedTable
Internal constructor used to create a projected potential.
AugmentedTable(AugmentedTable) - Constructor for class org.openmarkov.core.model.network.potential.AugmentedTable
 
augmentedTable - Variable in class org.openmarkov.core.model.network.potential.AugmentedTablePotential
 
AugmentedTablePotential - Class in org.openmarkov.core.model.network.potential
 
AugmentedTablePotential(List<Variable>, PotentialRole) - Constructor for class org.openmarkov.core.model.network.potential.AugmentedTablePotential
 
AugmentedTablePotential(AugmentedTablePotential) - Constructor for class org.openmarkov.core.model.network.potential.AugmentedTablePotential
 
AugmentedTablePotentialPanel - Class in org.openmarkov.gui.dialog.common
This class implements a Table potential table with the following features: Its elements, except the first column, are modifiable.
AugmentedTablePotentialPanel() - Constructor for class org.openmarkov.gui.dialog.common.AugmentedTablePotentialPanel
 
AugmentedTablePotentialPanel(Node) - Constructor for class org.openmarkov.gui.dialog.common.AugmentedTablePotentialPanel
This method creates, initialises, and displays an AugmentedValuesTable object for the first potential of the node
AugmentedTablePotentialPanel.MouseClickedListener - Class in org.openmarkov.gui.dialog.common
This class overrides the double click listener calling the
AugmentedValuesTable - Class in org.openmarkov.gui.component
This table implementation is responsible for the graphical and data model manipulation of the Node Potentials (either in a general family or in a canonical family potential).
AugmentedValuesTable(Node, ValuesTableModel, boolean) - Constructor for class org.openmarkov.gui.component.AugmentedValuesTable
Default constructor
AugmentedValuesTable(Node, ValuesTableModel, AugmentedTable, boolean) - Constructor for class org.openmarkov.gui.component.AugmentedValuesTable
 
AugmentedValuesTable(ValuesTableModel, boolean) - Constructor for class org.openmarkov.gui.component.AugmentedValuesTable
Constructor for ValuesTable revised-->not changed
AugmentedValuesTableCellRenderer - Class in org.openmarkov.gui.component
This class is used for painting and coloring the table and the headers
AugmentedValuesTableCellRenderer(int) - Constructor for class org.openmarkov.gui.component.AugmentedValuesTableCellRenderer
constructor for the renderer
AugmentedValuesTableModel - Class in org.openmarkov.gui.component
ValuesTableModel defines the basic behaviour of the Augmented Table Model
AugmentedValuesTableModel() - Constructor for class org.openmarkov.gui.component.AugmentedValuesTableModel
 
AugmentedValuesTableModel(Object[][], String[], int) - Constructor for class org.openmarkov.gui.component.AugmentedValuesTableModel
constructor
AUTHOR - Static variable in interface org.openmarkov.io.database.elvira.ElviraDBLexerTokenTypes
 
author() - Method in class org.openmarkov.io.database.elvira.ElviraDBParser
 
authors - Variable in class org.openmarkov.gui.dialog.AboutBox
 
automaticLearningRadioButton - Variable in class org.openmarkov.learning.gui.LearningDialog
 
automaticPropagation - Variable in class org.openmarkov.gui.window.edition.EditorPanel
This variable indicates if the propagation mode is automatic or manual.
automaticPropagationOptionsDialog - Variable in class org.openmarkov.gui.dialog.PropagationOptionsDialogListener
The Dialog to which this listener is associated
auxCopy(ProbNet) - Method in class org.openmarkov.core.model.network.ProbNet
Auxiliary method for copy, which creates a low deep copy of this ProbNet: copy the graph and the nodes but do not copy nor variables nor potentials.
auxGetInterventions() - Method in class org.openmarkov.core.model.network.potential.StrategyTree
 
AuxiliaryOperations - Class in org.openmarkov.core.model.network.potential.operation
Auxiliary methods for DiscretePotentialOperations and PotentialOperations classes
AuxiliaryOperations() - Constructor for class org.openmarkov.core.model.network.potential.operation.AuxiliaryOperations
Don't let anyone instantiate this class.
averageOfInterventions(Variable, double[], StrategyTree[]) - Static method in class org.openmarkov.core.model.network.potential.StrategyTree
Creates an intervention from a set of interventions and probabilities.
AxisVariation - Class in org.openmarkov.core.model.network.modelUncertainty
Created by Jorge on 02/07/2015.
AxisVariation() - Constructor for class org.openmarkov.core.model.network.modelUncertainty.AxisVariation
 
axisVariation - Variable in class org.openmarkov.sensitivityanalysis.dialog.PlotDialog
Axis variation of x axis
axisVariation - Variable in class org.openmarkov.sensitivityanalysis.dialog.TornadoSpiderDialog
Axis variation of x axis
AxisVariationPanel - Class in org.openmarkov.sensitivityanalysis.dialog
Panel with all controls needed to select axis variation of one or two uncertain parameters
AxisVariationPanel(SensitivityAnalysisController) - Constructor for class org.openmarkov.sensitivityanalysis.dialog.AxisVariationPanel
Panel with all controls needed to select axis variation of one or two uncertain parameters
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